STRINGSTRING
Solyc04g080650.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g080650.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g080650.2.1Uncharacterized protein (456 aa)    
Predicted Functional Partners:
Solyc08g062950.2.1
Uncharacterized protein (519 aa)
   
     
  0.715
Solyc03g111930.2.1
Uncharacterized protein (496 aa)
   
     
  0.642
Solyc09g059240.2.1
Uncharacterized protein (518 aa)
   
     
  0.633
Solyc05g047530.2.1
Trans-cinnamate 4-monooxygenase (528 aa)
   
     
  0.622
Solyc10g009390.2.1
Uncharacterized protein (556 aa)
   
     
  0.615
Solyc04g077440.2.1
Uncharacterized protein (525 aa)
     
 
  0.596
bc2.1
Squalene epoxidase 3-like (EC-1.14.13.132) (463 aa)
     
 
  0.596
Solyc11g068430.1.1
Putative ferredoxin (124 aa)
     
  0.570
Solyc11g065640.1.1
Uncharacterized protein (216 aa)
     
  0.570
Solyc11g006910.1.1
Uncharacterized protein (125 aa)
     
  0.570
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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