STRINGSTRING
Solyc04g080800.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g080800.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g080800.2.1Uncharacterized protein (368 aa)    
Predicted Functional Partners:
Solyc00g030210.1.1
Annotation not available (1147 aa)
   
   
  0.641
Solyc07g008950.2.1
Uncharacterized protein (812 aa)
         
  0.566
Solyc03g113860.1.1
Uncharacterized protein (288 aa)
 
     
  0.551
Solyc11g021130.1.1
Ribosomal protein S7 (285 aa)
         
  0.519
Solyc02g084730.2.1
rRNA adenine N(6)-methyltransferase (386 aa)
   
   
  0.504
Solyc01g100430.2.1
rRNA adenine N(6)-methyltransferase (354 aa)
   
   
  0.504
Solyc01g091800.2.1
rRNA adenine N(6)-methyltransferase (365 aa)
   
   
  0.504
Solyc08g078010.2.1
Uncharacterized protein (214 aa)
         
  0.477
Solyc01g008340.2.1
Putative L19 ribosomal protein (250 aa)
         
  0.477
Solyc08g066180.2.1
Uncharacterized protein (587 aa)
         
  0.473
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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