STRINGSTRING
LOC544102 protein (Solanum lycopersicum) - STRING interaction network
"LOC544102" - Histone H3 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC544102Histone H3 (136 aa)    
Predicted Functional Partners:
Solyc10g045400.1.1
Uncharacterized protein (404 aa)
       
  0.967
Solyc12g005270.1.1
Histone H2A (132 aa)
     
  0.954
Solyc11g073260.1.1
Histone H2A (141 aa)
     
  0.954
Solyc11g073250.1.1
Histone H2A (148 aa)
     
  0.954
Solyc11g028120.1.1
Histone H2A (129 aa)
     
  0.954
Solyc10g006560.2.1
Histone H2A (132 aa)
     
  0.954
Solyc09g082710.2.1
Histone H2A (142 aa)
     
  0.954
Solyc09g074300.1.1
Histone H2A (142 aa)
     
  0.954
Solyc09g010400.2.1
Histone H2A (145 aa)
     
  0.954
Solyc06g084430.2.1
Histone H2A (97 aa)
     
  0.954
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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