• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
101246422 protein (Solanum lycopersicum) - STRING interaction network
"101246422" - Pseudouridine synthase family protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
101246422Pseudouridine synthase family protein (431 aa)    
Predicted Functional Partners:
101265329
Queuine tRNA-ribosyltransferase catalytic subunit 1; Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis- dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1’ of nucleotide 34 to detach the guanine base from the RNA, formi [...] (410 aa)
   
   
  0.732
101244488
Pseudouridine synthase family protein (327 aa)
   
   
  0.704
101268033
Pseudouridine synthase family protein (389 aa)
   
   
  0.704
SlIPT5
Uncharacterized protein; tRNAisopentenyltransferase 2; Belongs to the IPP transferase family (467 aa)
   
   
  0.698
101259073
annotation not available (496 aa)
   
   
  0.622
Solyc02g043870.1.1
annotation not available (247 aa)
   
   
  0.622
Solyc07g017260.2.1
annotation not available (232 aa)
   
   
  0.618
Solyc07g017250.2.1
annotation not available (196 aa)
   
   
  0.618
101243758
annotation not available (414 aa)
 
 
  0.614
101258649
Uncharacterized protein; Sequence-specific DNA binding transcription factors (372 aa)
     
      0.584
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (6%) [HD]