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101251773 protein (Solanum lycopersicum) - STRING interaction network
"101251773" - Pseudouridine synthase family protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
101251773Pseudouridine synthase family protein (557 aa)    
Predicted Functional Partners:
101244661
Single hybrid motif superfamily protein (224 aa)
       
      0.891
101259148
Pseudouridine synthase family protein (420 aa)
   
   
  0.825
101260390
CONTAINS InterPro DOMAIN/s- Nrap protein (InterPro-IPR005554); Has 396 Blast hits to 382 proteins in 182 species- Archae - 3; Bacteria - 2; Metazoa - 142; Fungi - 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60 (source- NCBI BLink) (1051 aa)
     
        0.817
POLR1B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1096 aa)
     
        0.750
101260604
rRNA adenine N(6)-methyltransferase; Ribosomal RNA adenine dimethylase family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family (386 aa)
   
   
  0.667
101247757
rRNA adenine N(6)-methyltransferase; Ribosomal RNA adenine dimethylase family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family (354 aa)
   
   
  0.667
Solyc01g091800.2.1
rRNA adenine N(6)-methyltransferase; Ribosomal RNA adenine dimethylase family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family (365 aa)
   
   
  0.667
Solyc06g049100.2.1
annotation not available (229 aa)
     
   
  0.621
Solyc06g049090.2.1
annotation not available (196 aa)
     
   
  0.621
Solyc03g070400.1.1
annotation not available (303 aa)
     
   
  0.621
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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