STRINGSTRING
Solyc04g082130.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g082130.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g082130.2.1Uncharacterized protein (557 aa)    
Predicted Functional Partners:
Solyc04g081850.2.1
Uncharacterized protein (224 aa)
     
      0.953
Solyc02g081810.2.1
Uncharacterized protein (597 aa)
   
   
  0.530
Solyc02g093460.2.1
Uncharacterized protein (539 aa)
     
   
  0.434
Solyc05g053190.2.1
tRNA pseudouridine synthase (327 aa)
     
   
  0.419
Solyc01g103560.2.1
tRNA pseudouridine synthase (389 aa)
     
   
  0.419
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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