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STRINGSTRING
Solyc04g082770.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g082770.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g082770.2.1annotation not available (241 aa)    
Predicted Functional Partners:
101259381
annotation not available (669 aa)
           
  0.739
101249521
Uncharacterized protein; RNA-binding (RRM/RBD/RNP motifs) family protein (364 aa)
     
 
  0.658
101250765
annotation not available (225 aa)
           
  0.594
104644459
annotation not available (233 aa)
           
  0.594
101243796
annotation not available (126 aa)
           
  0.556
101263462
annotation not available (436 aa)
     
   
  0.524
101245230
HIT-type Zinc finger family protein (171 aa)
           
  0.501
101266547
RNA-binding KH domain-containing protein (803 aa)
     
 
  0.478
Solyc05g052000.2.1
annotation not available (219 aa)
     
 
  0.471
Solyc03g093350.2.1
Uncharacterized protein; Splicing factor-related (723 aa)
     
 
  0.471
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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