STRINGSTRING
Solyc05g005470.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g005470.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g005470.2.1Uncharacterized protein (540 aa)    
Predicted Functional Partners:
Solyc03g118550.2.1
Uncharacterized protein (386 aa)
     
   
  0.482
Solyc10g080080.1.1
Thioredoxin reductase (543 aa)
           
  0.478
Solyc04g016010.2.1
Uncharacterized protein (537 aa)
           
  0.478
Solyc10g007420.2.1
Uncharacterized protein (425 aa)
           
  0.451
Solyc10g007240.1.1
Uncharacterized protein (594 aa)
           
  0.451
Solyc10g007230.1.1
Uncharacterized protein (596 aa)
           
  0.451
Solyc07g062580.2.1
Uncharacterized protein (701 aa)
           
  0.451
Solyc12g019740.1.1
Uncharacterized protein (299 aa)
           
  0.437
Solyc11g008450.1.1
Uncharacterized protein (191 aa)
           
  0.437
Solyc10g080730.1.1
Uncharacterized protein (257 aa)
           
  0.437
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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