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101265540 protein (Solanum lycopersicum) - STRING interaction network
"101265540" - RNI-like superfamily protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
101265540RNI-like superfamily protein (610 aa)    
Predicted Functional Partners:
Solyc02g086780.2.1
Uncharacterized protein; CONTAINS InterPro DOMAIN/s- Proteasome assembly chaperone 3 (InterPro-IPR018788); Has 120 Blast hits to 120 proteins in 47 species- Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 2; Plants - 49; Viruses - 0; Other Eukaryotes - 7 (source- NCBI BLink) (80 aa)
           
  0.763
101256488
Uncharacterized protein; FAD/NAD(P)-binding oxidoreductase family protein (708 aa)
     
   
  0.701
Solyc08g083120.2.1
Uncharacterized protein; Ubiquitin (128 aa)
       
      0.695
Solyc08g008590.2.1
annotation not available (136 aa)
       
      0.695
Solyc06g053210.2.1
annotation not available (188 aa)
       
      0.695
101264240
Ubiquitin (128 aa)
       
      0.695
Solyc01g096290.2.1
Ubiquitin (128 aa)
       
      0.695
101257206
Uncharacterized protein; APRATAXIN-like (746 aa)
     
   
  0.691
101254712
Ribosomal protein L4 (288 aa)
     
   
  0.689
101256843
Uncharacterized protein; Tetratricopeptide repeat (TPR)-like superfamily protein (507 aa)
           
  0.684
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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