STRINGSTRING
Solyc05g006170.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g006170.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g006170.2.1Uncharacterized protein (610 aa)    
Predicted Functional Partners:
Solyc11g040120.1.1
DNA helicase (860 aa)
       
      0.802
Solyc01g105530.2.1
Uncharacterized protein (75 aa)
       
      0.802
Solyc01g105520.2.1
Uncharacterized protein (600 aa)
       
      0.802
Solyc05g018300.2.1
Uncharacterized protein (1080 aa)
     
    0.698
Solyc01g056690.2.1
Uncharacterized protein (653 aa)
       
  0.640
Solyc12g056540.1.1
Histone H3 (136 aa)
       
      0.604
Solyc11g010230.1.1
Histone H3 (136 aa)
       
      0.604
Solyc10g008910.1.1
Histone H3 (136 aa)
       
      0.604
Solyc09g059280.1.1
Uncharacterized protein (54 aa)
       
      0.604
Solyc05g051500.2.1
Histone H3 (136 aa)
       
      0.604
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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