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Solyc05g006360.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g006360.1.1" - Matrix metalloproteinases protein 4 in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g006360.1.1Matrix metalloproteinases protein 4 (357 aa)    
Predicted Functional Partners:
SODCP.2
Superoxide dismutase [Cu-Zn], chloroplastic ; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (217 aa)
           
  0.693
AT3
AT3 protein (452 aa)
           
  0.649
Solyc00g036760.1.1
Annotation not available (321 aa)
       
  0.590
Solyc12g008500.1.1
Uncharacterized protein (1008 aa)
     
    0.546
Solyc08g066210.2.1
Uncharacterized protein (1043 aa)
     
    0.546
Solyc06g069650.2.1
Uncharacterized protein (1099 aa)
     
    0.542
Solyc03g115610.2.1
Uncharacterized protein (1092 aa)
     
    0.542
Solyc01g102680.2.1
Uncharacterized protein (960 aa)
       
  0.535
Solyc12g098100.1.1
Uncharacterized protein (1097 aa)
       
    0.533
Solyc12g008400.1.1
Uncharacterized protein (1204 aa)
       
    0.533
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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