STRINGSTRING
Solyc05g006420.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g006420.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g006420.2.1Uncharacterized protein (251 aa)    
Predicted Functional Partners:
Solyc01g080540.2.1
Uncharacterized protein (151 aa)
       
 
  0.988
PHYB1
Phytochrome B1 ; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. Photoconversion of Pr to Pfr induces an array of morphogenic responses, whereas reconversion of Pfr to Pr cancels the induction of those responses. Pfr controls the expression of a number of nuclear genes including those encoding the small subunit of ribulose- bisphosphate carboxylase, chlorophyll A/B binding protein, protochlorophyllide reduc [...] (1131 aa)
   
 
 
  0.847
Solyc04g028560.2.1
Uncharacterized protein (777 aa)
       
  0.671
Solyc03g111590.2.1
Uncharacterized protein (1252 aa)
       
  0.671
Solyc02g089970.2.1
Uncharacterized protein (1509 aa)
     
  0.659
Solyc12g088390.1.1
Uncharacterized protein (200 aa)
       
  0.596
Solyc11g073060.1.1
Uncharacterized protein (154 aa)
       
  0.596
Solyc11g072210.1.1
Uncharacterized protein (480 aa)
       
  0.596
Solyc11g069240.1.1
Uncharacterized protein (449 aa)
       
  0.596
Solyc11g066420.1.1
Uncharacterized protein (384 aa)
       
  0.596
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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