STRINGSTRING
Solyc05g006440.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g006440.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g006440.2.1Uncharacterized protein (197 aa)    
Predicted Functional Partners:
petD
Cytochrome b6-f complex subunit 4 ; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions (139 aa)
       
 
  0.683
Solyc06g066620.2.1
Uncharacterized protein (147 aa)
   
        0.644
Solyc06g019200.2.1
Uncharacterized protein (468 aa)
   
        0.614
Solyc02g005200.2.1
Uncharacterized protein (365 aa)
   
        0.595
Solyc03g034170.2.1
Uncharacterized protein (285 aa)
   
        0.588
Solyc07g054820.2.1
Uncharacterized protein (250 aa)
   
        0.567
Solyc01g098640.2.1
Uncharacterized protein (289 aa)
   
        0.566
Solyc10g011770.2.1
Uncharacterized protein (169 aa)
   
        0.552
Solyc01g095430.2.1
Uncharacterized protein (170 aa)
   
        0.551
Solyc04g011900.2.1
Uncharacterized protein (330 aa)
   
        0.547
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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