STRINGSTRING
Solyc05g006950.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g006950.2.1" - Embryo yellow protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g006950.2.1Embryo yellow protein (835 aa)    
Predicted Functional Partners:
Solyc08g075440.2.1
Uncharacterized protein (691 aa)
     
  0.940
Solyc01g087650.2.1
Uncharacterized protein (576 aa)
     
  0.937
Solyc03g120700.2.1
Uncharacterized protein (1073 aa)
     
  0.937
Solyc10g007720.2.1
Uncharacterized protein (845 aa)
     
  0.931
Solyc08g006660.1.1
Uncharacterized protein (742 aa)
     
  0.931
Solyc07g056010.2.1
Uncharacterized protein (736 aa)
     
  0.927
Solyc07g017530.2.1
Uncharacterized protein (216 aa)
     
  0.909
Solyc07g017520.2.1
Uncharacterized protein (259 aa)
     
  0.909
Solyc04g008640.2.1
Uncharacterized protein (779 aa)
     
  0.909
Solyc01g109540.2.1
Coatomer subunit gamma ; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (886 aa)
     
 
  0.769
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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