STRINGSTRING
RdRP protein (Solanum lycopersicum) - STRING interaction network
"RdRP" - RNA-directed RNA polymerase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RdRPRNA-directed RNA polymerase (1114 aa)    
Predicted Functional Partners:
DCL
Protein DCL, chloroplastic ; Has a function in the early stage of chloroplast development and palisade cell morphogenesis (224 aa)
           
  0.906
Solyc11g008520.1.1
Uncharacterized protein (1428 aa)
     
 
  0.798
Solyc06g048960.2.1
Uncharacterized protein (1399 aa)
     
 
  0.798
Solyc07g005030.2.1
Uncharacterized protein (1536 aa)
     
 
  0.797
DCL1
Endoribonuclease Dicer homolog 1 (1888 aa)
     
 
  0.789
LOC544268
Chloroplast-specific ribosomal protein (311 aa)
           
  0.700
LOC543942
Regulator of gene silencing (198 aa)
           
  0.695
CLEB3J9
Thylakoid lumenal 29 kDa protein, chloroplastic (345 aa)
           
  0.695
AO
Ascorbate oxidase (578 aa)
           
  0.695
SGS3
Protein SUPPRESSOR OF GENE SILENCING 3 ; Required for post-transcriptional gene silencing and natural virus resistance (633 aa)
     
 
  0.648
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (6%) [HD]