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STRINGSTRING
Solyc05g007900.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g007900.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g007900.2.1annotation not available (156 aa)    
Predicted Functional Partners:
101248592
Uncharacterized protein; Ubiquitin fusion degradation UFD1 family protein (569 aa)
     
   
  0.796
Solyc08g080040.2.1
Uncharacterized protein; Leucoanthocyanidin dioxygenase; Belongs to the iron/ascorbate-dependent oxidoreductase family (418 aa)
           
  0.763
101248749
annotation not available (358 aa)
     
   
  0.740
101245380
annotation not available (329 aa)
     
   
  0.740
101243841
RING/U-box superfamily protein (240 aa)
     
   
  0.739
101262467
Membrane-anchored ubiquitin-fold protein; May serve as docking site to facilitate the association of other proteins to the plasma membrane (118 aa)
           
  0.697
101246014
Membrane-anchored ubiquitin-fold protein; May serve as docking site to facilitate the association of other proteins to the plasma membrane (118 aa)
           
  0.697
101248524
annotation not available (317 aa)
     
   
  0.663
101246440
annotation not available (857 aa)
           
  0.569
Wfi1
Uncharacterized protein; Whitefly-induced gp91-phox (938 aa)
           
  0.569
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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