STRINGSTRING
Solyc05g008340.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g008340.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g008340.2.1Uncharacterized protein (402 aa)    
Predicted Functional Partners:
Solyc04g081080.1.1
Non-specific serine/threonine protein kinase (1136 aa)
       
  0.524
Solyc03g033610.1.1
Non-specific serine/threonine protein kinase (1128 aa)
       
  0.524
Solyc02g084370.1.1
Non-specific serine/threonine protein kinase (1127 aa)
       
  0.524
Solyc03g006560.2.1
Uncharacterized protein (294 aa)
           
  0.487
Solyc05g009980.2.1
Uncharacterized protein (599 aa)
           
  0.481
Solyc12g095870.1.1
Uncharacterized protein (295 aa)
           
  0.459
LOC543789
Beta 1,3-glycosyltransferase-like protein I (343 aa)
     
   
  0.436
Solyc12g096440.1.1
Hexosyltransferase (261 aa)
           
  0.432
Solyc12g005880.1.1
Hexosyltransferase (395 aa)
           
  0.432
Solyc11g042810.1.1
Hexosyltransferase (394 aa)
           
  0.432
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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