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STRINGSTRING
Solyc05g008670.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g008670.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g008670.2.1Uncharacterized protein; Zinc finger C-x8-C-x5-C-x3-H type family protein (298 aa)    
Predicted Functional Partners:
CNOT1
Uncharacterized protein; Transcription regulators (2411 aa)
     
 
  0.663
Solyc10g006410.2.1
Unknown protein; Has 266 Blast hits to 264 proteins in 44 species- Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 9 (source- NCBI BLink) (568 aa)
           
  0.647
Solyc03g118520.2.1
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- response to oxidative stress; LOCATED IN- endomembrane system; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 15 growth stages; Has 53 Blast hits to 53 proteins in 21 spec /.../rchae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink) (115 aa)
           
  0.619
101264721
RNA helicase family protein (700 aa)
       
 
  0.572
Solyc05g014760.2.1
annotation not available (809 aa)
           
  0.531
Solyc12g098510.1.1
annotation not available (152 aa)
           
  0.522
101253364
Unknown protein; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF1674 (InterPro-IPR012875); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Ot /.../karyotes - 2996 (source- NCBI BLink) (111 aa)
           
  0.522
Solyc02g079240.1.1
annotation not available (79 aa)
           
  0.522
101260790
Hexosyltransferase; Galactosyltransferase family protein; Belongs to the glycosyltransferase 31 family (394 aa)
           
  0.520
Solyc11g007330.1.1
annotation not available (164 aa)
           
  0.519
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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