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Solyc05g008780.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g008780.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g008780.2.1Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- plasma membrane, vacuole; EXPRESSED IN- guard cell, cultured cell; BEST Arabidopsis thaliana protein match is- proton pump interactor 1 (TAIR-AT4G27500.1) /.../30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (1542 aa)    
Predicted Functional Partners:
101265334
Protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (1080 aa)
     
   
  0.821
GATA
Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho- Glu-tRNA(Gln) (529 aa)
     
   
  0.709
Solyc09g055570.2.1
Leucine-rich repeat protein kinase family protein (930 aa)
     
      0.704
101249974
annotation not available (386 aa)
     
        0.601
101055534
Hop-interacting protein THI121 (202 aa)
           
  0.597
Solyc10g006750.2.1
annotation not available (104 aa)
           
  0.597
101265452
annotation not available (257 aa)
           
  0.597
101246984
annotation not available (185 aa)
           
  0.597
101263462
annotation not available (436 aa)
           
  0.570
Solyc07g040920.2.1
annotation not available (209 aa)
           
  0.471
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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