STRINGSTRING
Solyc05g009520.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g009520.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g009520.1.1Uncharacterized protein (175 aa)    
Predicted Functional Partners:
Solyc07g008880.2.1
Uncharacterized protein (2384 aa)
     
 
  0.931
Solyc06g043160.1.1
Uncharacterized protein (52 aa)
     
 
  0.931
Solyc08g062920.2.1
Elongation factor 2 (828 aa)
     
      0.903
Solyc08g062910.2.1
Elongation factor 2 (770 aa)
     
      0.903
Solyc07g054200.2.1
Uncharacterized protein (753 aa)
     
 
  0.673
Solyc07g007210.2.1
Uncharacterized protein (925 aa)
     
 
  0.632
Solyc12g062900.1.1
Uncharacterized protein (226 aa)
       
      0.629
Solyc11g071770.1.1
Uncharacterized protein (1024 aa)
       
      0.629
Solyc08g079180.2.1
Uncharacterized protein (787 aa)
       
      0.629
Solyc01g090690.2.1
Uncharacterized protein (760 aa)
       
      0.629
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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