STRINGSTRING
Solyc05g009560.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g009560.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g009560.2.1Uncharacterized protein (223 aa)    
Predicted Functional Partners:
Solyc12g008680.1.1
Uncharacterized protein (242 aa)
     
  0.969
Solyc09g007210.2.1
Uncharacterized protein (268 aa)
     
 
  0.623
Solyc08g081590.1.1
Uncharacterized protein (251 aa)
     
 
  0.623
Solyc07g065440.2.1
Uncharacterized protein (147 aa)
     
 
  0.623
Solyc07g065430.2.1
Uncharacterized protein (383 aa)
     
 
  0.623
RAD51
DNA repair protein RAD51 homolog ; Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Underwinds duplex DNA (By similarity) (342 aa)
     
  0.580
Solyc09g082790.2.1
Uncharacterized protein (334 aa)
     
  0.577
Solyc05g050960.2.1
Uncharacterized protein (213 aa)
     
  0.551
Solyc05g050950.2.1
Uncharacterized protein (123 aa)
     
  0.551
Solyc06g009680.2.1
Uncharacterized protein (1237 aa)
     
 
  0.488
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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