STRINGSTRING
Solyc05g009760.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g009760.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g009760.1.1Uncharacterized protein (721 aa)    
Predicted Functional Partners:
Solyc11g010250.1.1
Uncharacterized protein (141 aa)
           
  0.929
Solyc04g071140.2.1
Uncharacterized protein (482 aa)
           
  0.929
Solyc04g077020.2.1
Uncharacterized protein ; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (450 aa)
       
  0.870
Solyc09g011060.2.1
Clade IV lectin receptor kinase (832 aa)
     
  0.830
Solyc07g039550.2.1
Uncharacterized protein (1190 aa)
       
  0.742
Solyc01g110990.2.1
Uncharacterized protein (1111 aa)
       
  0.742
Solyc12g035870.1.1
Uncharacterized protein (398 aa)
       
  0.719
CNOT1
CCR4-NOT transcription complex subunit 1 (2411 aa)
     
  0.694
Solyc09g090660.2.1
Uncharacterized protein (521 aa)
       
  0.694
Solyc10g081370.1.1
Uncharacterized protein ; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (88 aa)
       
    0.692
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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