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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc05g012320.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g012320.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g012320.1.1annotation not available (266 aa)    
Predicted Functional Partners:
101245449
Uncharacterized protein; Endoribonucleases (729 aa)
           
  0.879
101259434
Uncharacterized protein; Tetrapyrrole (Corrin/Porphyrin) Methylases (272 aa)
     
   
  0.755
101257312
annotation not available (81 aa)
           
  0.742
101246276
Transducin family protein / WD-40 repeat family protein (1382 aa)
       
 
  0.722
101251806
Putative tRNA (cytidine(32)/guanosine(34)-2’-O)-methyltransferase; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (316 aa)
     
   
  0.687
Solyc06g008310.2.1
Elongator protein 2 (825 aa)
           
  0.680
101256980
Diphthamide synthesis DPH2 family protein (483 aa)
     
   
  0.662
101264686
Diphthamide synthesis DPH2 family protein (498 aa)
     
   
  0.653
101259712
Uncharacterized protein; Nucleotide-diphospho-sugar transferases superfamily protein (519 aa)
           
  0.645
Solyc08g062920.2.1
Uncharacterized protein; Elongation factor 2 (828 aa)
       
 
  0.611
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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