STRINGSTRING
Solyc05g012940.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g012940.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g012940.2.1Uncharacterized protein (334 aa)    
Predicted Functional Partners:
Solyc02g069070.2.1
Uncharacterized protein (165 aa)
     
 
  0.966
pcna
Proliferating cell nuclear antigen ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
     
 
  0.959
Solyc11g006860.1.1
Ribonuclease ; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (297 aa)
     
 
  0.870
Solyc06g071770.2.1
Uncharacterized protein (737 aa)
           
  0.493
Solyc03g112230.2.1
Uncharacterized protein (864 aa)
           
  0.493
Solyc03g112270.2.1
Uncharacterized protein (526 aa)
           
  0.445
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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