STRINGSTRING
Solyc05g013480.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g013480.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g013480.2.1Uncharacterized protein (353 aa)    
Predicted Functional Partners:
Solyc05g006440.2.1
Uncharacterized protein (197 aa)
   
   
  0.527
Solyc03g007830.2.1
Uncharacterized protein (177 aa)
   
          0.518
Solyc06g084470.2.1
Uncharacterized protein (172 aa)
   
          0.516
Solyc10g085900.1.1
Uncharacterized protein (306 aa)
   
          0.513
Solyc03g098110.2.1
Uncharacterized protein (385 aa)
   
          0.513
Solyc10g011770.2.1
Uncharacterized protein (169 aa)
   
          0.511
Solyc02g072460.1.1
Uncharacterized protein (154 aa)
   
          0.510
Solyc09g005740.1.1
Uncharacterized protein (354 aa)
   
          0.509
Solyc02g062350.2.1
Uncharacterized protein (270 aa)
   
          0.509
Solyc01g095430.2.1
Uncharacterized protein (170 aa)
   
          0.509
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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