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101267115 protein (Solanum lycopersicum) - STRING interaction network
"101267115" - RNA-binding protein-related in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
101267115RNA-binding protein-related (351 aa)    
Predicted Functional Partners:
101250451
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
           
  0.677
Solyc04g082270.2.1
Arabidopsis protein of unknown function (DUF241) (314 aa)
           
  0.634
101264778
annotation not available (121 aa)
           
  0.580
101254657
Uncharacterized protein; Sec14p-like phosphatidylinositol transfer family protein (471 aa)
           
  0.555
Solyc04g080400.1.1
annotation not available (564 aa)
           
  0.548
Solyc10g054550.1.1
annotation not available (274 aa)
           
  0.444
101249763
annotation not available (549 aa)
           
  0.444
Solyc02g070070.1.1
annotation not available (531 aa)
           
  0.444
101260194
Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress (337 aa)
           
  0.426
101257785
Cysteine proteinases superfamily protein; Belongs to the peptidase C1 family (342 aa)
           
  0.414
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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