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Solyc05g018620.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g018620.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g018620.2.1Uncharacterized protein; Regulator of chromosome condensation (RCC1) family protein (307 aa)    
Predicted Functional Partners:
COP1
Uncharacterized protein; COP1 homolog (677 aa)
       
 
  0.979
HY5
Transcription factor HY5; Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light- induced genes (158 aa)
           
  0.948
101259391
COP1-like protein (360 aa)
       
 
  0.906
101249698
annotation not available (672 aa)
       
 
  0.904
LOC543596
Cryptochrome 2 (635 aa)
     
   
  0.878
CRY3
Cryptochrome DASH, chloroplastic/mitochondrial; May have a photoreceptor function and might bind ss- and ds-DNA in a sequence non-specific manner. Lacks photolyase activity. Has a potential role in detecting the dawn and dusk transitions and, consequently, in circadian input pathways (577 aa)
     
   
  0.826
phyA
Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region (1123 aa)
           
  0.823
101249027
SPA (suppressor of phyA-105) protein family (1019 aa)
       
 
  0.816
101257312
annotation not available (81 aa)
       
 
  0.810
100037733
Uncharacterized protein; Phototropin 1 (1017 aa)
           
  0.798
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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