STRINGSTRING
Solyc05g018780.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g018780.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g018780.1.1Uncharacterized protein (379 aa)    
Predicted Functional Partners:
Solyc02g070100.2.1
Uncharacterized protein (585 aa)
     
      0.978
Solyc05g023710.2.1
Uncharacterized protein (638 aa)
     
      0.976
Solyc02g081680.2.1
Uncharacterized protein (750 aa)
     
      0.976
Solyc01g103740.2.1
Uncharacterized protein (504 aa)
     
 
  0.975
Solyc01g103720.2.1
Uncharacterized protein (99 aa)
     
 
  0.975
Solyc07g047670.2.1
Pescadillo homolog ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (603 aa)
     
 
  0.969
Solyc09g061430.2.1
Putative nuclear GTPase (609 aa)
     
   
  0.966
Solyc06g084270.2.1
Uncharacterized protein (370 aa)
     
   
  0.966
Solyc06g083520.2.1
Uncharacterized protein (605 aa)
     
   
  0.966
Solyc02g088780.2.1
Ribosome biogenesis protein WDR12 homolog ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (423 aa)
     
   
  0.963
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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