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STRINGSTRING
Solyc05g021200.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g021200.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g021200.1.1annotation not available (124 aa)    
Predicted Functional Partners:
101265334
Protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (1080 aa)
     
 
  0.902
Solyc10g079730.1.1
Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases (1400 aa)
     
        0.764
101263097
Kinesin-like protein; ATP binding microtubule motor family protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family (962 aa)
     
 
  0.685
101262432
Unknown protein; Has 38228 Blast hits to 24529 proteins in 1168 species- Archae - 169; Bacteria - 4103; Metazoa - 14594; Fungi - 5866; Plants - 1861; Viruses - 317; Other Eukaryotes - 11318 (source- NCBI BLink) (761 aa)
     
        0.602
101264317
Unknown protein; Has 48 Blast hits to 48 proteins in 21 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 8 (source- NCBI BLink); Belongs to the complex I LYR family (91 aa)
           
  0.556
101261082
Uncharacterized protein; Formyltransferase, putative (360 aa)
           
  0.550
101247141
Uncharacterized protein; CLUB (1254 aa)
     
   
  0.526
101262580
Uncharacterized protein; Titan9 (304 aa)
           
  0.520
101253001
ARM repeat superfamily protein (1057 aa)
     
   
  0.517
101267681
annotation not available (743 aa)
     
        0.516
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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