Solyc05g024290.2.1 protein (Solanum lycopersicum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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some 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

Solyc05g024290.2.1

Uncharacterized protein (465 aa)

Predicted Functional Partners:

Solyc12g056940.1.1

0.979

Solyc02g094380.1.1

0.805

Solyc12g007100.1.1

0.801

Solyc01g056690.2.1

0.785

Solyc12g044540.1.1

0.710

Solyc01g096490.2.1

0.697

Solyc12g096520.1.1

0.680

Solyc12g096020.1.1

0.680

Solyc12g042570.1.1

0.680

Solyc12g010450.1.1

0.680

Your Current Organism:

Solanum lycopersicum

NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Solyc01g056690.2.1	Solyc01g096490.2.1	Uncharacterized protein	Uncharacterized protein	0.806
Solyc01g056690.2.1	Solyc02g094380.1.1	Uncharacterized protein	Uncharacterized protein	0.784
Solyc01g056690.2.1	Solyc05g024290.2.1	Uncharacterized protein	Uncharacterized protein	0.785
Solyc01g056690.2.1	Solyc12g007100.1.1	Uncharacterized protein	Uncharacterized protein	0.589
Solyc01g056690.2.1	Solyc12g010450.1.1	Uncharacterized protein	Uncharacterized protein	0.447
Solyc01g056690.2.1	Solyc12g042570.1.1	Uncharacterized protein	Uncharacterized protein	0.450
Solyc01g056690.2.1	Solyc12g044540.1.1	Uncharacterized protein	Uncharacterized protein	0.420
Solyc01g056690.2.1	Solyc12g096020.1.1	Uncharacterized protein	Uncharacterized protein	0.451
Solyc01g056690.2.1	Solyc12g096520.1.1	Uncharacterized protein	Uncharacterized protein	0.445
Solyc01g096490.2.1	Solyc01g056690.2.1	Uncharacterized protein	Uncharacterized protein	0.806
Solyc01g096490.2.1	Solyc02g094380.1.1	Uncharacterized protein	Uncharacterized protein	0.697
Solyc01g096490.2.1	Solyc05g024290.2.1	Uncharacterized protein	Uncharacterized protein	0.697
Solyc01g096490.2.1	Solyc12g007100.1.1	Uncharacterized protein	Uncharacterized protein	0.583
Solyc01g096490.2.1	Solyc12g010450.1.1	Uncharacterized protein	Uncharacterized protein	0.599
Solyc01g096490.2.1	Solyc12g042570.1.1	Uncharacterized protein	Uncharacterized protein	0.599
Solyc01g096490.2.1	Solyc12g096020.1.1	Uncharacterized protein	Uncharacterized protein	0.599
Solyc01g096490.2.1	Solyc12g096520.1.1	Uncharacterized protein	Uncharacterized protein	0.599
Solyc02g094380.1.1	Solyc01g056690.2.1	Uncharacterized protein	Uncharacterized protein	0.784
Solyc02g094380.1.1	Solyc01g096490.2.1	Uncharacterized protein	Uncharacterized protein	0.697
Solyc02g094380.1.1	Solyc05g024290.2.1	Uncharacterized protein	Uncharacterized protein	0.805

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