STRINGSTRING
Solyc05g040060.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g040060.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g040060.1.1Uncharacterized protein (101 aa)    
Predicted Functional Partners:
Solyc12g035870.1.1
Uncharacterized protein (398 aa)
     
  0.896
Solyc11g065370.1.1
Uncharacterized protein (446 aa)
       
  0.746
Solyc01g096950.2.1
Uncharacterized protein (523 aa)
     
  0.746
FIE
Fertilization-independent endosperm protein (372 aa)
     
  0.735
Solyc10g007420.2.1
Uncharacterized protein (425 aa)
     
  0.656
Solyc10g007240.1.1
Uncharacterized protein (594 aa)
     
  0.656
Solyc10g007230.1.1
Uncharacterized protein (596 aa)
     
  0.656
Solyc03g112530.2.1
Uncharacterized protein (481 aa)
     
  0.642
Solyc12g013940.1.1
Uncharacterized protein (407 aa)
     
  0.634
Solyc09g061290.2.1
Uncharacterized protein (762 aa)
     
  0.634
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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