STRINGSTRING
Solyc05g041670.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g041670.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g041670.1.1Uncharacterized protein (88 aa)    
Predicted Functional Partners:
Solyc02g093240.1.1
Uncharacterized protein (86 aa)
   
          0.514
Solyc10g005880.2.1
Uridine kinase (422 aa)
   
        0.467
Solyc07g065890.2.1
Uridine kinase (446 aa)
   
        0.467
Solyc06g065580.2.1
Uridine kinase (483 aa)
   
        0.467
Solyc02g067880.1.1
Uridine kinase (445 aa)
   
        0.467
Solyc05g041300.1.1
Uncharacterized protein (140 aa)
   
          0.464
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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