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STRINGSTRING
Solyc05g043200.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g043200.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g043200.1.1annotation not available (320 aa)    
Predicted Functional Partners:
eIF(iso)4E
Uncharacterized protein; Eukaryotic translation initiation factor iso4E (200 aa)
       
 
  0.589
cdc5
CDC5-like protein (987 aa)
     
      0.553
pds
Phytoene dehydrogenase, chloroplastic/chromoplastic; This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11’ positions of phytoene (583 aa)
           
  0.551
Solyc10g054730.1.1
annotation not available (442 aa)
           
  0.517
101264345
Uncharacterized protein; Pentatricopeptide repeat (PPR) superfamily protein (896 aa)
           
  0.517
101259881
BEST Arabidopsis thaliana protein match is- Calcium-binding EF hand family protein (TAIR-AT1G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Ot /.../karyotes - 2996 (source- NCBI BLink) (184 aa)
           
  0.517
LOC543653
Eukaryotic translation initiation factor 4E; Translation initiation factor eIF4E1 (231 aa)
     
 
  0.439
eIF4E2
Uncharacterized protein; Translation initiation factor eIF4E2 (185 aa)
     
 
  0.439
101265255
annotation not available (295 aa)
     
 
  0.414
101266359
annotation not available (162 aa)
           
  0.414
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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