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Solyc05g047450.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g047450.1.1" - methyl-CPG-binding domain protein 02 in Solanum lycopersicum
Nodes:
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
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[Homology]
Score
Solyc05g047450.1.1methyl-CPG-binding domain protein 02 (350 aa)    
Predicted Functional Partners:
Solyc02g085390.2.1
annotation not available (811 aa)
       
 
  0.659
101248358
annotation not available (771 aa)
       
 
  0.659
Solyc11g073080.1.1
Uncharacterized protein; methyl-CPG-binding domain 7 (220 aa)
           
  0.605
Solyc06g065620.1.1
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; EXPRESSED IN- 6 plant structures; EXPRESSED DURING- petal differentiation and expansion stage, E expanded cotyledon /.../ D bilateral stage; Has 23 Blast hits to 23 proteins in 8 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (472 aa)
           
  0.585
MET
DNA (cytosine-5)-methyltransferase; Cytosine-specific methyltransferase ; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family (1559 aa)
       
 
  0.578
101263628
Uncharacterized protein; DNA methyltransferase-2; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family (381 aa)
       
 
  0.570
Solyc06g010200.2.1
annotation not available (1613 aa)
       
 
  0.563
MBD5
annotation not available (248 aa)
           
  0.563
101251648
annotation not available (430 aa)
     
 
  0.548
101254943
Histone deacetylase 1; Belongs to the histone deacetylase family. HD Type 1 subfamily (498 aa)
     
 
  0.548
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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