STRINGSTRING
Solyc05g047450.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g047450.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g047450.1.1Uncharacterized protein (350 aa)    
Predicted Functional Partners:
Solyc11g073080.1.1
Uncharacterized protein (220 aa)
           
  0.511
MBD5
MBD5 (248 aa)
           
  0.497
Solyc04g074250.1.1
Uncharacterized protein (1177 aa)
           
  0.489
Solyc11g005250.1.1
Uncharacterized protein (1376 aa)
     
  0.474
Solyc07g032510.2.1
Uncharacterized protein (873 aa)
     
  0.436
Solyc02g084620.2.1
Uncharacterized protein (832 aa)
     
  0.436
Solyc11g067020.1.1
Histone deacetylase (430 aa)
       
  0.435
Solyc09g091440.2.1
Histone deacetylase (498 aa)
       
  0.435
Solyc06g071680.2.1
Histone deacetylase (471 aa)
       
  0.435
Solyc03g112410.1.1
Histone deacetylase (449 aa)
       
  0.435
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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