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STRINGSTRING
SKIV2L2 protein (Solanum lycopersicum) - STRING interaction network
"SKIV2L2" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKIV2L2annotation not available (936 aa)    
Predicted Functional Partners:
Solyc07g052340.2.1
Uncharacterized protein; Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (884 aa)
     
 
  0.988
101243936
annotation not available (861 aa)
     
 
  0.986
101267058
Uncharacterized protein; Ribosomal RNA processing 4 (325 aa)
     
 
  0.982
101262055
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes (229 aa)
     
 
  0.981
101249690
Ribosomal protein L24e family protein (166 aa)
     
 
  0.980
Solyc10g083600.1.1
Ribosomal RNA processing Brix domain protein (337 aa)
     
 
  0.977
Solyc03g112530.2.1
WD-40 repeat family protein / notchless protein, putative (481 aa)
     
 
  0.975
101263184
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly (329 aa)
     
      0.972
101249122
ARM repeat superfamily protein (861 aa)
     
 
  0.972
101261023
Uncharacterized protein; Eukaryotic initiation factor 3 gamma subunit family protein (446 aa)
     
 
  0.968
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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