STRINGSTRING
Solyc05g048850.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g048850.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g048850.2.1Uncharacterized protein (537 aa)    
Predicted Functional Partners:
Solyc03g113780.2.1
Uncharacterized protein (529 aa)
     
  0.974
Solyc03g113770.2.1
Uncharacterized protein (471 aa)
     
  0.974
Solyc09g010300.2.1
Uncharacterized protein (364 aa)
     
  0.964
Solyc06g074210.2.1
Uncharacterized protein (369 aa)
     
  0.964
Solyc01g009390.2.1
Uncharacterized protein (368 aa)
     
  0.964
Solyc05g056110.2.1
Uncharacterized protein (321 aa)
     
  0.963
Solyc09g009640.2.1
Uncharacterized protein (99 aa)
       
  0.960
Solyc10g078450.1.1
Uncharacterized protein (44 aa)
       
  0.953
CNOT1
CCR4-NOT transcription complex subunit 1 (2411 aa)
     
 
  0.941
Solyc09g072970.2.1
Uncharacterized protein (93 aa)
       
  0.921
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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