STRINGSTRING
Solyc05g050110.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g050110.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g050110.2.1Uncharacterized protein (259 aa)    
Predicted Functional Partners:
Solyc08g068570.2.1
Uncharacterized protein (498 aa)
   
        0.512
Solyc03g019880.2.1
Uncharacterized protein (123 aa)
   
          0.509
Solyc06g036030.1.1
Uncharacterized protein (132 aa)
   
          0.502
Solyc02g090020.2.1
Uncharacterized protein (248 aa)
   
          0.502
Solyc10g005470.2.1
Uncharacterized protein (139 aa)
   
          0.483
Solyc10g061980.1.1
Uncharacterized protein (148 aa)
   
          0.473
Solyc10g005830.2.1
Uncharacterized protein (254 aa)
   
          0.469
Solyc02g072160.2.1
Uncharacterized protein (577 aa)
   
        0.468
HrBP1
Harpin binding protein 1 (276 aa)
   
          0.465
Solyc11g027920.1.1
Uncharacterized protein (115 aa)
   
          0.461
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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