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atg6 protein (Solanum lycopersicum) - STRING interaction network
"atg6" - Hop-interacting protein THI040 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atg6Hop-interacting protein THI040 (523 aa)    
Predicted Functional Partners:
Solyc04g015350.2.1
Uncharacterized protein (815 aa)
     
  0.993
Solyc04g012170.2.1
Uncharacterized protein (1516 aa)
     
  0.992
Solyc12g056940.1.1
Uncharacterized protein (2210 aa)
       
 
  0.962
Solyc09g092030.2.1
Uncharacterized protein (354 aa)
     
  0.950
Solyc06g034160.2.1
Autophagy-related protein 3 (313 aa)
     
  0.913
Solyc04g008630.2.1
Uncharacterized protein (899 aa)
     
  0.899
Solyc12g049310.1.1
Ubiquitin-like protein ATG12 ; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation (90 aa)
       
  0.886
Solyc07g006120.2.1
Uncharacterized protein (365 aa)
     
  0.867
Solyc09g037010.1.1
Uncharacterized protein (205 aa)
     
  0.863
Solyc03g051700.1.1
Uncharacterized protein (199 aa)
     
  0.863
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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