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atg6 protein (Solanum lycopersicum) - STRING interaction network
"atg6" - Hop-interacting protein THI040 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atg6Hop-interacting protein THI040 (523 aa)    
Predicted Functional Partners:
101250591
Vacuolar protein sorting 34; Belongs to the PI3/PI4-kinase family (815 aa)
     
 
  0.997
Solyc04g012170.2.1
Protein kinase family protein / WD-40 repeat family protein (1516 aa)
     
 
  0.995
Solyc06g034160.2.1
Autophagy-related protein 3; Autophagy 3 (APG3) (313 aa)
     
 
  0.994
101246793
ThiF family protein (715 aa)
     
 
  0.990
Solyc04g008630.2.1
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle (899 aa)
     
 
  0.989
101262344
Autophagocytosis-associated family protein (236 aa)
           
  0.968
101255009
Uncharacterized protein; Homolog of yeast autophagy 18 (ATG18) B (365 aa)
     
 
  0.965
SlATG4
annotation not available (391 aa)
     
 
  0.962
101266762
Unknown protein; Has 229 Blast hits to 229 proteins in 104 species- Archae - 0; Bacteria - 2; Metazoa - 79; Fungi - 90; Plants - 49; Viruses - 0; Other Eukaryotes - 9 (source- NCBI BLink) (354 aa)
     
 
  0.962
101259616
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation (90 aa)
     
 
  0.958
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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