STRINGSTRING
Solyc05g050940.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g050940.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g050940.2.1Uncharacterized protein (453 aa)    
Predicted Functional Partners:
Solyc08g005140.2.1
Uncharacterized protein (226 aa)
   
  0.965
Solyc06g084160.2.1
Uncharacterized protein (292 aa)
   
  0.965
Solyc01g108260.2.1
Uncharacterized protein (153 aa)
       
  0.932
Solyc10g007420.2.1
Uncharacterized protein (425 aa)
     
 
  0.753
Solyc10g007240.1.1
Uncharacterized protein (594 aa)
     
 
  0.753
Solyc10g007230.1.1
Uncharacterized protein (596 aa)
     
 
  0.753
Solyc05g056260.2.1
Uncharacterized protein (342 aa)
   
   
  0.738
Solyc01g087500.2.1
DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1478 aa)
   
   
  0.721
Solyc04g074630.2.1
Uncharacterized protein (433 aa)
     
 
  0.710
Solyc04g079870.1.1
Uncharacterized protein (329 aa)
     
 
  0.708
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (8%) [HD]