STRINGSTRING
Solyc05g051060.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g051060.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g051060.2.1Uncharacterized protein (284 aa)    
Predicted Functional Partners:
Solyc11g069470.1.1
Uncharacterized protein (841 aa)
           
  0.524
Solyc08g079100.2.1
Uncharacterized protein (216 aa)
           
  0.522
Solyc01g091010.2.1
Uncharacterized protein (218 aa)
           
  0.522
Solyc11g008830.1.1
Uncharacterized protein (230 aa)
           
  0.497
LOC543604
Phantastica (360 aa)
           
  0.493
ARF3
Auxin response factor 3 ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (747 aa)
           
  0.491
T6
Homeobox protein knotted-1-like LET6 ; May have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5’-TGAC- 3’ (354 aa)
           
  0.454
Solyc12g044410.1.1
Uncharacterized protein (837 aa)
           
  0.439
Solyc08g066500.2.1
Uncharacterized protein (827 aa)
           
  0.439
Solyc03g120910.2.1
Uncharacterized protein (836 aa)
           
  0.439
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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