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Rab1C protein (Solanum lycopersicum) - STRING interaction network
"Rab1C" - Small GTP-binding protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rab1CSmall GTP-binding protein (203 aa)    
Predicted Functional Partners:
Solyc03g007680.2.1
SNARE-like superfamily protein (175 aa)
     
 
  0.895
101243746
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi (186 aa)
     
 
  0.878
101243742
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi (186 aa)
     
 
  0.878
101249127
SNARE-like superfamily protein (141 aa)
       
 
  0.871
101257356
Transport protein particle (TRAPP) component (194 aa)
     
 
  0.861
101259410
annotation not available (444 aa)
     
 
  0.860
101261051
annotation not available (444 aa)
     
 
  0.860
GDI1
Guanosine nucleotide diphosphate dissociation inhibitor; Rab-GDP dissociation inhibitor ; Belongs to the Rab GDI family (445 aa)
     
 
  0.860
Solyc12g040810.1.1
annotation not available (288 aa)
     
 
  0.776
Solyc03g118570.2.1
annotation not available (286 aa)
     
 
  0.776
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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