STRINGSTRING
Solyc05g052840.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g052840.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g052840.1.1Uncharacterized protein (341 aa)    
Predicted Functional Partners:
Solyc01g091090.2.1
Uncharacterized protein (481 aa)
       
  0.654
TBCD
Tubulin-folding cofactor D (805 aa)
       
  0.654
Solyc11g011390.1.1
Uncharacterized protein (543 aa)
         
  0.520
Solyc09g066290.2.1
Uncharacterized protein (646 aa)
         
  0.520
Solyc08g008460.2.1
Uncharacterized protein (398 aa)
         
  0.520
Solyc03g114320.2.1
Uncharacterized protein (730 aa)
         
  0.520
Solyc03g082990.2.1
Uncharacterized protein (568 aa)
         
  0.520
Solyc02g086840.2.1
Uncharacterized protein (711 aa)
         
  0.520
I-2Int3
Hop-interacting protein THI007 (402 aa)
         
  0.520
Solyc09g031870.2.1
Uncharacterized protein (49 aa)
       
 
  0.519
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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