• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc05g053260.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g053260.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g053260.2.1Uncharacterized protein; S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (561 aa)    
Predicted Functional Partners:
101263628
Uncharacterized protein; DNA methyltransferase-2; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family (381 aa)
           
  0.817
RPE1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1678 aa)
       
 
  0.779
MET
DNA (cytosine-5)-methyltransferase; Cytosine-specific methyltransferase ; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family (1559 aa)
           
  0.665
101267211
annotation not available (933 aa)
           
  0.592
Solyc01g006100.2.1
annotation not available (808 aa)
           
  0.592
101257929
annotation not available (130 aa)
           
  0.567
101258429
Auxin repressed/dormancy associated protein (123 aa)
           
  0.567
101246300
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (448 aa)
           
  0.552
101254943
Histone deacetylase 1; Belongs to the histone deacetylase family. HD Type 1 subfamily (498 aa)
           
  0.549
Solyc09g015280.1.1
Uncharacterized protein; Tetratricopeptide repeat (TPR)-like superfamily protein (149 aa)
           
  0.539
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (7%) [HD]