STRINGSTRING
Solyc05g053740.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g053740.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g053740.2.1Uncharacterized protein (255 aa)    
Predicted Functional Partners:
Solyc05g007460.2.1
Uncharacterized protein (269 aa)
       
  0.929
Solyc01g010860.2.1
Uncharacterized protein (266 aa)
       
  0.929
Solyc03g006630.2.1
Uncharacterized protein (486 aa)
         
  0.928
Solyc02g079030.2.1
Uncharacterized protein (477 aa)
         
  0.928
Solyc06g054340.1.1
Uncharacterized protein (190 aa)
         
  0.927
LOC543709
Putative sphingolipid delta 4 desaturase DES-1 (332 aa)
         
    0.900
Solyc04g072190.2.1
Uncharacterized protein (93 aa)
         
    0.900
Solyc09g092120.2.1
Uncharacterized protein (190 aa)
         
 
0.800
Solyc09g065830.2.1
Uncharacterized protein (255 aa)
       
      0.625
Solyc03g097010.2.1
Uncharacterized protein (112 aa)
       
      0.625
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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