STRINGSTRING
Solyc05g053800.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g053800.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g053800.2.1Uncharacterized protein (1316 aa)    
Predicted Functional Partners:
Solyc09g009340.1.1
Uncharacterized protein (731 aa)
   
  0.997
Solyc09g098230.2.1
Uncharacterized protein (624 aa)
     
  0.978
Solyc01g111870.1.1
Uncharacterized protein (2728 aa)
     
  0.976
Solyc07g042790.1.1
Uncharacterized protein (1452 aa)
     
  0.974
Solyc06g034070.1.1
Uncharacterized protein (1557 aa)
     
  0.974
Solyc01g091350.2.1
ATP-dependent DNA helicase 2 subunit KU80 ; Single-stranded DNA-dependent ATP-dependent helicase (709 aa)
     
  0.971
Solyc01g091430.1.1
Uncharacterized protein (126 aa)
     
  0.971
Solyc07g065430.2.1
Uncharacterized protein (383 aa)
     
  0.947
Solyc06g010100.1.1
Uncharacterized protein (855 aa)
   
  0.946
Solyc09g007210.2.1
Uncharacterized protein (268 aa)
     
  0.946
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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