STRINGSTRING
Solyc05g053880.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g053880.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g053880.2.1Uncharacterized protein (324 aa)    
Predicted Functional Partners:
Solyc12g088290.1.1
Uncharacterized protein (820 aa)
     
      0.915
Solyc04g077740.1.1
Uncharacterized protein (360 aa)
     
      0.915
Solyc04g077680.2.1
Uncharacterized protein (809 aa)
     
      0.915
Solyc06g073120.2.1
Uncharacterized protein (257 aa)
     
        0.832
Solyc07g041020.2.1
Uncharacterized protein (313 aa)
     
        0.830
Solyc03g112820.2.1
U3 small nucleolar ribonucleoprotein protein MPP10 ; Involved in nucleolar processing of pre-18S ribosomal RNA (552 aa)
     
 
  0.764
Solyc09g075030.2.1
Uncharacterized protein (196 aa)
     
        0.744
Solyc10g084740.1.1
Uncharacterized protein (440 aa)
     
      0.739
Solyc08g008040.2.1
Uncharacterized protein (203 aa)
     
      0.739
Solyc01g098100.2.1
60S ribosome subunit biogenesis protein NIP7 homolog ; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
     
        0.729
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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