STRINGSTRING
Solyc05g053950.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g053950.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g053950.2.1Uncharacterized protein (319 aa)    
Predicted Functional Partners:
Solyc09g090510.2.1
Uncharacterized protein (862 aa)
 
   
  0.756
Solyc03g045140.2.1
Uncharacterized protein (815 aa)
 
   
  0.750
Solyc09g090500.2.1
Uncharacterized protein (436 aa)
 
          0.652
Solyc04g056450.2.1
Uncharacterized protein (582 aa)
 
          0.647
Solyc08g062610.2.1
Uncharacterized protein (355 aa)
 
          0.640
Solyc02g063390.2.1
Uncharacterized protein (318 aa)
 
          0.619
Solyc01g005320.2.1
Uncharacterized protein (322 aa)
 
          0.602
Solyc12g010320.1.1
Temperature-induced lipocalin (185 aa)
 
          0.559
Solyc07g005210.2.1
Temperature-induced lipocalin’ (185 aa)
 
          0.556
Solyc04g056440.1.1
Uncharacterized protein (210 aa)
   
          0.526
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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