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Solyc05g054100.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g054100.2.1" - ER membrane protein complex subunit 3 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g054100.2.1ER membrane protein complex subunit 3; Protein of unknown function DUF106, transmembrane (289 aa)    
Predicted Functional Partners:
101267847
annotation not available (300 aa)
     
 
  0.997
101246647
Uncharacterized protein; CONTAINS InterPro DOMAIN/s- Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro-IPR016687), Protein of unknown function DUF1077 (InterPro-IPR009445); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bac /.../- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (178 aa)
     
 
  0.994
101252322
Uncharacterized protein; Catalytics (982 aa)
     
 
  0.993
Solyc04g047720.2.1
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endoplasmic reticulum, plasma membrane; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 13 growth stages; Has 149 Blast hits to 149 /.../ns in 49 species- Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 4 (source- NCBI BLink) (205 aa)
     
 
  0.966
101244326
annotation not available (204 aa)
     
 
  0.956
101268196
annotation not available (204 aa)
     
 
  0.956
101245811
annotation not available (293 aa)
     
 
  0.936
101262544
annotation not available (203 aa)
     
 
  0.936
101264333
annotation not available (197 aa)
     
 
  0.936
101256736
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (245 aa)
     
 
  0.916
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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