STRINGSTRING
Solyc05g054130.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g054130.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g054130.2.1Uncharacterized protein (341 aa)    
Predicted Functional Partners:
Solyc07g062940.2.1
Uncharacterized protein (716 aa)
       
  0.955
Solyc05g012130.2.1
Uncharacterized protein (817 aa)
       
  0.916
Solyc08g083040.2.1
Uncharacterized protein (727 aa)
     
  0.722
Solyc08g008550.2.1
Uncharacterized protein (712 aa)
     
  0.722
Solyc03g117790.1.1
Uncharacterized protein (698 aa)
     
  0.722
Solyc02g086790.2.1
Uncharacterized protein (655 aa)
     
  0.722
Solyc10g017830.1.1
Uncharacterized protein (413 aa)
     
  0.716
Solyc10g017710.1.1
Uncharacterized protein (495 aa)
     
  0.716
Solyc10g017700.1.1
Uncharacterized protein (423 aa)
     
  0.716
Solyc10g017690.1.1
Uncharacterized protein (366 aa)
     
  0.716
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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