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STRINGSTRING
Solyc05g054180.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g054180.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g054180.2.1annotation not available (488 aa)    
Predicted Functional Partners:
101266584
SERINE CARBOXYPEPTIDASE-LIKE 49; Belongs to the peptidase S10 family (501 aa)
           
  0.852
101266908
annotation not available (659 aa)
           
  0.852
Solyc02g084840.2.1
annotation not available (157 aa)
           
  0.852
101260811
annotation not available (451 aa)
           
  0.785
Solyc02g067790.2.1
Uncharacterized protein; High affinity nitrate transporter 2.7 (460 aa)
           
  0.785
101268001
RING/U-box superfamily protein (272 aa)
       
      0.706
101263482
annotation not available (560 aa)
       
      0.625
101258246
annotation not available (487 aa)
       
      0.625
101262798
annotation not available (93 aa)
           
  0.603
101259015
annotation not available (459 aa)
           
  0.592
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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