STRINGSTRING
LOC543678 protein (Solanum lycopersicum) - STRING interaction network
"LOC543678" - Sip1 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC543678Sip1 (285 aa)    
Predicted Functional Partners:
Solyc01g099280.2.1
Uncharacterized protein (483 aa)
     
  0.965
Solyc01g067590.2.1
Uncharacterized protein (482 aa)
     
  0.965
Solyc01g010700.2.1
Uncharacterized protein (444 aa)
     
  0.965
Solyc03g118070.2.1
Uncharacterized protein (466 aa)
     
0.947
SRK2C
SNF1-related kinase (345 aa)
     
  0.911
Solyc05g052980.2.1
Uncharacterized protein (409 aa)
     
 
  0.855
Solyc03g006960.2.1
Uncharacterized protein (376 aa)
     
 
  0.855
SNF1
SNF1 (514 aa)
     
  0.848
Solyc12g056940.1.1
Uncharacterized protein (2210 aa)
     
  0.824
Solyc09g018750.2.1
Uncharacterized protein (197 aa)
     
  0.786
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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