STRINGSTRING
Solyc05g054890.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g054890.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g054890.2.1Uncharacterized protein (750 aa)    
Predicted Functional Partners:
Solyc12g098800.1.1
Uncharacterized protein (55 aa)
           
  0.690
Solyc12g006050.1.1
Uncharacterized protein (592 aa)
           
  0.690
Solyc11g065190.1.1
Uncharacterized protein (181 aa)
           
  0.690
Solyc10g047430.1.1
Uncharacterized protein (73 aa)
           
  0.690
Solyc08g083120.2.1
Ubiquitin (128 aa)
           
  0.690
Solyc08g077910.2.1
Uncharacterized protein (251 aa)
           
  0.690
Solyc07g055690.1.1
Uncharacterized protein (448 aa)
           
  0.690
Solyc06g009940.1.1
Uncharacterized protein (72 aa)
           
  0.690
Solyc04g016170.1.1
Uncharacterized protein (117 aa)
           
  0.690
Solyc03g093080.2.1
Xyloglucan endotransglucosylase/hydrolase ; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (286 aa)
           
  0.690
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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